PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1293180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 430aa    MW: 45176.7 Da    PI: 6.6598
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1293180.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1233.4e-38691982111
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                      ++k+ +++ +h kv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++      
  Lj2g3v1293180.1  69 PPKRPPTKARHPKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSAPshyfrg 162
                      789******************************************************************9997666777776644444555666 PP

              TCP  89 .............kaaksaakskksqksaasalnla 111
                                   ++ +s a+  ++ + + s +n++
  Lj2g3v1293180.1 163 nyfspttfstaaaSQLRSRAEWDRNMNMSMSSNNMN 198
                      666665554444422222223333333333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136925.21375129IPR017887Transcription factor TCP subgroup
PfamPF036341.1E-3775234IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MELEAADHHH HHHQNGIRTR PNFPLQLLEK TDLDLEDVSE QQQQQPCSTT AHDGGGDIVA  60
TADQAKKQPP KRPPTKARHP KVDGRGRRIR MPAACAARVF QLTRELGHKS DGETIEWLLQ  120
QAEPAVIAAT GTGTIPANFT SLNISLRSSG SSMSAPSHYF RGNYFSPTTF STAAASQLRS  180
RAEWDRNMNM SMSSNNMNED SRRVTMLENP SSSLSSIMNF NSVSNVNAML QAKHELREEE  240
AAASGSGGGF ELVTADSDGS LGRKRRPEQE LSQMGSYLLQ SNVGSLPASH ASNTAAFWMV  300
AGNGGNQGVS GGGGASNGDP IWAIPSVGNS GVYRGAVPAA AGGIHFMNFA SPMMPFMPGS  360
QLGSSLMGNG GGGSGGSAFM GESNLGMLSA LNGYRQNPAN GLPESPTSAG QHHGGGGGDD  420
GHDDSTSQHP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.98580.0pod| protoplast| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157639.10.0hypothetical protein PHAVU_002G086600g
TrEMBLV7CJV70.0V7CJV7_PHAVU; Uncharacterized protein
STRINGGLYMA02G11781.11e-171(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.19e-43TCP family protein